Browsing Institutt for informatikk by Author "Quince, Christopher"

Now showing items 1-4 of 4

  • Swarm v2: highly-scalable and high-resolution amplicon clustering 
    Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2015)
    Previously we presented Swarm v1, a novel and open source amplicon clustering program that produced fine-scale molecular operational taxonomic units (OTUs), free of arbitrary global clustering thresholds and input-order ...
  • Swarm v3: towards tera-scale amplicon clustering 
    Mahé, Frédéric; Czech, Lucas; Stamatakis, Alexandros; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah; Rognes, Torbjørn (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2021)
    Motivation Previously we presented swarm, an open-source amplicon clustering programme that produces fine-scale molecular operational taxonomic units (OTUs) that are free of arbitrary global clustering thresholds. Here, ...
  • Swarm: robust and fast clustering method for amplicon-based studies 
    Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2014)
    Popular de novo amplicon clustering methods suffer from two fundamental flaws: arbitrary global clustering thresholds, and input-order dependency induced by centroid selection. Swarm was developed to address these issues ...
  • VSEARCH: a versatile open source tool for metagenomics 
    Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher; Mahé, Frédéric (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2016)
    Background. VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. It is designed as an alternative to ...