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dc.date.accessioned2018-10-29T08:38:11Z
dc.date.available2018-10-29T08:38:11Z
dc.date.created2018-01-26T15:16:49Z
dc.date.issued2017
dc.identifier.citationSalleh, Faezah Mohd Ramos-Madrigal, Jazmín Peñaloza, Fernando Liu, Shanlin Sinding, Mikkel Holger Strander Patel, Riddhi P. Martins, Renata Lenz, Dorina Fickel, Jörns Roos, Christian Shamsir, Mohd Shahir Azman, Mohammad Shahfiz Lim, Burton K. Rossiter, Stephen J. Wilting, Andreas Gilbert, Marcus Thomas Pius . An expanded mammal mitogenome dataset from Southeast asia. GigaScience. 2017, 6(8), 1-8
dc.identifier.urihttp://hdl.handle.net/10852/65319
dc.description.abstractSoutheast (SE) Asia is 1 of the most biodiverse regions in the world, and it holds approximately 20% of all mammal species. Despite this, the majority of SE Asia's genetic diversity is still poorly characterized. The growing interest in using environmental DNA to assess and monitor SE Asian species, in particular threatened mammals—has created the urgent need to expand the available reference database of mitochondrial barcode and complete mitogenome sequences. We have partially addressed this need by generating 72 new mitogenome sequences reconstructed from DNA isolated from a range of historical and modern tissue samples. Approximately 55 gigabases of raw sequence were generated. From this data, we assembled 72 complete mitogenome sequences, with an average depth of coverage of ×102.9 and ×55.2 for modern samples and historical samples, respectively. This dataset represents 52 species, of which 30 species had no previous mitogenome data available. The mitogenomes were geotagged to their sampling location, where known, to display a detailed geographical distribution of the species. Our new database of 52 taxa will strongly enhance the utility of environmental DNA approaches for monitoring mammals in SE Asia as it greatly increases the likelihoods that identification of metabarcoding sequencing reads can be assigned to reference sequences. This magnifies the confidence in species detections and thus allows more robust surveys and monitoring programmes of SE Asia's threatened mammal biodiversity. The extensive collections of historical samples from SE Asia in western and SE Asian museums should serve as additional valuable material to further enrich this reference database.en_US
dc.languageEN
dc.language.isoenen_US
dc.publisherOxford University Press
dc.rightsAttribution 4.0 International
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.titleAn expanded mammal mitogenome dataset from Southeast asiaen_US
dc.title.alternativeENEngelskEnglishAn expanded mammal mitogenome dataset from Southeast asia
dc.typeJournal articleen_US
dc.creator.authorSalleh, Faezah Mohd
dc.creator.authorRamos-Madrigal, Jazmín
dc.creator.authorPeñaloza, Fernando
dc.creator.authorLiu, Shanlin
dc.creator.authorSinding, Mikkel Holger Strander
dc.creator.authorPatel, Riddhi P.
dc.creator.authorMartins, Renata
dc.creator.authorLenz, Dorina
dc.creator.authorFickel, Jörns
dc.creator.authorRoos, Christian
dc.creator.authorShamsir, Mohd Shahir
dc.creator.authorAzman, Mohammad Shahfiz
dc.creator.authorLim, Burton K.
dc.creator.authorRossiter, Stephen J.
dc.creator.authorWilting, Andreas
dc.creator.authorGilbert, Marcus Thomas Pius
cristin.unitcode185,28,0,0
cristin.unitnameNaturhistorisk museum
cristin.ispublishedtrue
cristin.fulltextoriginal
cristin.qualitycode1
dc.identifier.cristin1553080
dc.identifier.bibliographiccitationinfo:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=GigaScience&rft.volume=6&rft.spage=1&rft.date=2017
dc.identifier.jtitleGigaScience
dc.identifier.volume6
dc.identifier.issue8
dc.identifier.doihttp://dx.doi.org/10.1093/gigascience/gix053
dc.identifier.urnURN:NBN:no-68056
dc.type.documentTidsskriftartikkelen_US
dc.type.peerreviewedPeer reviewed
dc.source.issn2047-217X
dc.identifier.fulltextFulltext https://www.duo.uio.no/bitstream/handle/10852/65319/1/gix053.pdf
dc.type.versionPublishedVersion
cristin.articleidgix053


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