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JASPAR RESTful API: accessing JASPAR data from any programming language

Khan, Aziz; Mathelier, Anthony
Journal article; PublishedVersion; Peer reviewed
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Khan_Mathelier_Bioinformatics.pdf (128.8Kb)
Year
2017
Permanent link
http://urn.nb.no/URN:NBN:no-67652

CRIStin
1530642

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  • Det medisinske fakultet [257]
  • CRIStin høstingsarkiv [14929]
Original version
Bioinformatics. 2017:btx804, DOI: http://dx.doi.org/10.1093/bioinformatics/btx804
Abstract
JASPAR is a widely used open-access database of curated, non-redundant transcription factor binding profiles. Currently, data from JASPAR can be retrieved as flat files or by using programming language-specific interfaces. Here, we present a programming language-independent application programming interface (API) to access JASPAR data using the Representational State Transfer (REST) architecture. The REST API enables programmatic access to JASPAR by most programming languages and returns data in eight widely used formats. Several endpoints are available to access the data and an endpoint is available to infer the TF binding profile(s) likely bound by a given DNA binding domain protein sequence. Additionally, it provides an interactive browsable interface for bioinformatics tool developers.
 
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