Browsing Institutt for informatikk by Author "Nederbragt, Alexander J"
Now showing items 1-6 of 6
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Tørresen, Ole K; Star, Bastiaan; Jentoft, Sissel; Reinar, William B; Grove, Harald; Miller, Jason R; Walenz, Brian P; Knight, James; Ekholm, Jenny M; Peluso, Paul; Edvardsen, Rolf B; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill S; Nederbragt, Alexander J (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2017)Background The first Atlantic cod (Gadus morhua) genome assembly published in 2011 was one of the early genome assemblies exclusively based on high-throughput 454 pyrosequencing. Since then, rapid advances ...
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Grytten, Ivar; Rand, Knut D; Nederbragt, Alexander J; Sandve, Geir K (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2020)Background Graph-based reference genomes have become popular as they allow read mapping and follow-up analyses in settings where the exact haplotypes underlying a high-throughput sequencing experiment are ...
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Tørresen, Ole K; Brieuc, Marine S O; Solbakken, Monica H; Sørhus, Elin; Nederbragt, Alexander J; Jakobsen, Kjetill S; Meier, Sonnich; Edvardsen, Rolf B; Jentoft, Sissel (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2018)Background Increased availability of genome assemblies for non-model organisms has resulted in invaluable biological and genomic insight into numerous vertebrates, including teleosts. Sequencing of the ...
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Lie, Kai K; Tørresen, Ole K; Solbakken, Monica H; Rønnestad, Ivar; Tooming-Klunderud, Ave; Nederbragt, Alexander J; Jentoft, Sissel; Sæle, Øystein (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2018)Background The ballan wrasse (Labrus bergylta) belongs to a large teleost family containing more than 600 species showing several unique evolutionary traits such as lack of stomach and hermaphroditism. ...
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Khelik, Ksenia; Sandve, Geir K; Nederbragt, Alexander J; Rognes, Torbjørn (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2020)Background Advances in whole genome sequencing strategies have provided the opportunity for genomic and comparative genomic analysis of a vast variety of organisms. The analysis results are highly dependent on the quality ...
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NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences Khelik, Ksenia; Lagesen, Karin; Sandve, Geir K; Rognes, Torbjørn; Nederbragt, Alexander J (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2017)Background Comparing sets of sequences is a situation frequently encountered in bioinformatics, examples being comparing an assembly to a reference genome, or two genomes to each other. The purpose of the ...